Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7y6l
Q-score: 0.492
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ DOI: doi:10.1016/j.isci.2023.106955 Pubmed: 37288342 ]
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab816 (560 kDa, Complex from Homo sapiens)
- Ab816 heavy chain (28 kDa, Protein from Homo sapiens)
- Ab816 light chain (26 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7y6n
Q-score: 0.288
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ DOI: doi:10.1016/j.isci.2023.106955 Pubmed: 37288342 ]
- Ab803 heavy chain (28 kDa, Protein from Homo sapiens)
- Ab803 light chain (26 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab803 (560 kDa, Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7x93
Q-score: 0.486
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ DOI: doi:10.1016/j.isci.2023.106955 Pubmed: 37288342 ]
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab354 (560 kDa, Complex from Homo sapiens)
- Ab765 heavy chain (28 kDa, Protein from Homo sapiens)
- Ab765 light chain (25 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7x94
Q-score: 0.359
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ DOI: doi:10.1016/j.isci.2023.106955 Pubmed: 37288342 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab712 (560 kDa, Complex from Homo sapiens)
- Ab712 heavy chain (29 kDa, Protein from Homo sapiens)
- Ab712 light chain (25 kDa, Protein from Homo sapiens)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7x95
Q-score: 0.386
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ DOI: doi:10.1016/j.isci.2023.106955 Pubmed: 37288342 ]
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab709 (560 kDa, Complex from Homo sapiens)
- Ab709 heavy chain (28 kDa, Protein from Homo sapiens)
- Ab709 light chain (25 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7x96
Q-score: 0.46
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ DOI: doi:10.1016/j.isci.2023.106955 Pubmed: 37288342 ]
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab847 (560 kDa, Complex from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ab847 light chain (26 kDa, Protein from Homo sapiens)
- Ab847 heavy chain (28 kDa, Protein from Homo sapiens)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7x8w
Q-score: 0.53
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Moriyama S, Takahashi Y, Ishigaki H, Nakayama M, Nguyen CT, Kitagawa Y, Itoh Y, Imai M, Maemura T, Furusawa Y, Ueki H, Iwatsuki-Horimoto K, Ito M, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2022) 25 pp. 105596-105596 [ DOI: doi:10.1016/j.isci.2022.105596 Pubmed: 36406861 ]
- Ab354 light chain (25 kDa, Protein from Homo sapiens)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab354 (560 kDa, Complex from Homo sapiens)
- Ab354 heavy chain (28 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7x8y
Q-score: 0.318
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Moriyama S, Takahashi Y, Ishigaki H, Nakayama M, Nguyen CT, Kitagawa Y, Itoh Y, Imai M, Maemura T, Furusawa Y, Ueki H, Iwatsuki-Horimoto K, Ito M, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2022) 25 pp. 105596-105596 [ DOI: doi:10.1016/j.isci.2022.105596 Pubmed: 36406861 ]
- Ab159 heavy chain (28 kDa, Protein from Homo sapiens)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab159 (560 kDa, Complex from Homo sapiens)
- Ab159 light chain (26 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7x8z
Q-score: 0.368
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Moriyama S, Takahashi Y, Ishigaki H, Nakayama M, Nguyen CT, Kitagawa Y, Itoh Y, Imai M, Maemura T, Furusawa Y, Ueki H, Iwatsuki-Horimoto K, Ito M, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2022) 25 pp. 105596-105596 [ DOI: doi:10.1016/j.isci.2022.105596 Pubmed: 36406861 ]
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab354 (560 kDa, Complex from Homo sapiens)
- Ab188 light chain (27 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ab188 heavy chain (28 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7x90
Q-score: 0.392
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Moriyama S, Takahashi Y, Ishigaki H, Nakayama M, Nguyen CT, Kitagawa Y, Itoh Y, Imai M, Maemura T, Furusawa Y, Ueki H, Iwatsuki-Horimoto K, Ito M, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2022) 25 pp. 105596-105596 [ DOI: doi:10.1016/j.isci.2022.105596 Pubmed: 36406861 ]
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab326 (560 kDa, Complex from Homo sapiens)
- Ab326 heavy chain (28 kDa, Protein from Homo sapiens)
- Ab326 light chain (26 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)